Find features using KPIC2

Uses the KPIC2 R package to extract features.

findFeaturesKPIC2(
  analysisInfo,
  kmeans = TRUE,
  level = 1000,
  ...,
  parallel = TRUE,
  verbose = TRUE
)

Arguments

analysisInfo: A data.frame with Analysis information.
kmeans: If TRUE then getPIC.kmeans is used to obtain PICs, otherwise it is getPIC.
level: Passed to getPIC or getPIC.kmeans
...: Further parameters passed to getPIC/getPIC.kmeans
parallel: If set to TRUE then code is executed in parallel through the futures package. Please see the parallelization section in the handbook for more details.
verbose: If set to FALSE then no text output is shown.

An object of a class which is derived from features.

This function uses KPIC2 to automatically find features. This function is called when calling findFeatures with algorithm="kpic2".

The MS files should be in the mzML or mzXML format.

The input MS data files need to be centroided. The convertMSFiles function can be used to centroid data.

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